CONSERVATION & MOLECULAR ECOLOGY
  • Home
  • Research
    • DNA metabarcoding
    • Conservation Genetics
    • Molecular Parasitology
    • Savanna Ecology
    • Sloth Ecology & Evolution
    • Fray Jorge
    • Yellowstone
  • Resources
    • Publications
    • News
    • Bioinformatics Workshop
    • Protocols
    • Software & Data
  • Impact
    • Conservation
    • Annual Reports
    • Donate
  • Work with us
    • People
    • Join
    • Contract & Collaborate >
      • DNA metabarcoding contracts | Kartzinel Lab
      • DNA barcoding
      • Training
  • Contact

Kartzinel Lab​ News

HelmBank: DNA Barcodes for Wildlife Parasites

3/18/2026

0 Comments

 

HelmBank Release R1: DNA barcodes for wildlife parasites—now available

A new Kartzinel Lab data release, built with partners across Central and South America, is creating the reference tools needed to identify parasitic worms (helminths) that infect wildlife using DNA barcoding. HelmBank links expertly identified and voucher-backed parasite specimens to host species and geographic data—so conservation biologists, wildlife veterinarians, and molecular ecologists can translate parasite detections from sick or free-ranging animals into reliable data.

First public release of HelmBank strengthens parasite detection for Neotropical mammals
Release R1 publishes 45 parasite DNA barcode sequences, drawn from a larger working collection of more than 100 specimens. Hosts represented across HelmBank already include big cats (ocelot, jaguar, puma), foxes, tapirs, peccaries, sloths, armadillos, anteaters, and opossums—a cross-section of wildlife central to conservation and wildlife health programs across the region.

Why this matters for conservation, wildlife health, and One Health
DNA-based monitoring is increasingly used to study diets, microbiomes, and pathogens—but parasites are often left out because reference datasets are missing or too geographically mismatched to support confident identification. HelmBank is designed to close that gap by building a rigorously curated "field guide" for molecular parasitology—improving comparability across studies and strengthening our ability to monitor disease risk, which is especially important for both conservation and public health in areas where wildlife, livestock, and humans share landscapes.

🔗 Explore the release

  • Project Overview: Molecular Parasitology
  • Technical Notes: Release R1
  • Related Projects: Sloth Ecology & Conservation
Interested in collaborating or supporting HelmBank?
Work with us | Donate | Contact

Read More
0 Comments

Biodiversity credits and DNA reference libraries

3/11/2026

0 Comments

 

Biodiversity credits: where markets meet monitoring, DNA reference libraries are a high-leverage investment

Biodiversity credits are moving quickly from concept notes to implementation—and East African savannas are where some of the hardest questions are being tested.

The promise is simple: markets can channel finance toward measurable, verifiable biodiversity outcomes at landscape scales. But the challenge is just as clear: unlike with carbon credits, biodiversity "units" can be counted in so many ways.

Since a credit is only as credible as the monitoring behind it, a theme that keeps emerging from technical and policy discussions involves trying to figure out whether DNA-powered approaches can help. In principle, any DNA we detect in the environment can help make biodiversity surveys more reliable and harder to game. But all DNA-based approaches rely on unseen infrastructure that most people never consider: reference DNA libraries that must be constructed based on verifiably identified specimens. When biodiversity targets are poorly covered by these libraries, even the most sophisticated survey methods can collapse into reports that are frustratingly full of "unknowns."

That message came through repeatedly at recent meetings in Nairobi, Kenya. Last week, Dr. Mary Burak (Senior Postdoc, Genomic Opportunities Lab) attended both the Business for Conservation Conference and the Global Conservation Technology & Drone Forum. A recurring question she encountered in conversations with practitioners, business leaders, and researchers went like this: what would it take to use DNA as "creditable" in savanna biodiversity programs—and who is going to build the databases we need to get there?
What would it take to make DNA evidence "creditable" in savanna biodiversity programs—and who is going to build the databases we need to get there?
Because translating complex biodiversity data into actionable information is one of our team's core strengths, we wanted to share this post as a practical summary of the field. We will outline how biodiversity credits work, how programs affecting East African savannas are typically structured, and when DNA can add real value. You will discover that DNA reference libraries are currently an undervalued and high-leverage investment that savvy leaders are making—they recognize that you can't make DNA creditable without it.

​The key question we reveal for anyone who wants to participate in this market: what is the return on investment you can expect from building the reference libraries that underpin success—and how long will it take for the investment to increase the value of your monitoring services or offset programs?

Read More
0 Comments

Launching Charismatic Critter Club

3/6/2026

0 Comments

 

Charismatic Critter Club—Science Illustration that Makes Conservation Click

A new science-illustration project is giving biodiversity a fresh cast of characters. Charismatic Critter Club was founded by Julianne “Jules” Ho—a student in the Brown–RISD Dual Degree Program and an undergraduate researcher of Institute at Brown for Environment & Society.

Charismatic Critter Club creates short visual narratives to translate the hidden biology of how real species live their lives into illustrated characters that we can all identify with.

The goal: make complex ecological relationships—food webs, symbioses, microbiomes, parasites—easier to understand, remember, and share, without washing over the science.
🔗 Charismatic Critter Club
🔗 Brown–RISD Dual Degree
Jules Ho uses her scientific training to create charismatic creatures--the art makes it easier to understand, remember, and share about species that are often overlooked components of biodiversity.
Jules Ho uses her scientific training to create charismatic creatures—the art makes it easier to understand, remember, and share about species that are often overlooked components of biodiversity.

Read More
0 Comments

Alumni Spotlight: Andy Luo

3/5/2026

0 Comments

 

Alumni Spotlight: Andy Luo (Biology, Honors, 2021–2024)

Picture
Student Success Coach, City Year Greater Boston. Brown Biology alum; Fulbright Scholar in Taiwan; matriculating medical student; contestant on Jeopardy!
 
Andy Luo was an undergraduate researcher in the Kartzinel Lab for three years and a core member of our Italian wall lizard project team. Andy’s research focused on the physiological and behavioral mechanisms that allow a Mediterranean lizard to persist through the frigid Boston winters—work that culminated in an Honors thesis and a first-authored manuscript (in review at Herpetology Notes). After graduating, Andy pursued a path that bridges science, education, and service: he spent 11 months in rural Chiayi County, Taiwan as a Fulbright English Teaching Assistant. Before starting medical school in 2026, Andy has served as a Student Success Coach with City Year Greater Boston to support fifth graders in an under-resourced public school.

Read More
0 Comments

Metabarcoding vs Metagenomics

3/3/2026

0 Comments

 

Metabarcoding vs. Metagenomics: Two Ways to Decode Diets and Microbiomes

​Modern ecological research increasingly relies on DNA to discover what animals eat.

Two broad classes of DNA-based strategies—called DNA metabarcoding and metagenomics—can provide complementary data that provide insight into what animals eat and why it matters.

When should we select one versus the other (or try combining both)?
An Oxford Nanopore MinION is a portable sequencing platform for metabarcoding and metagenomic applications
An Oxford Nanopore MinION is a portable sequencing platform for metabarcoding and metagenomic applications

Read More
0 Comments

Metabarcoding vs Direct Observation

3/3/2026

0 Comments

 

Metabarcoding Versus Direct Observation in Wildlife Diet Studies

Direct observation is the oldest method in ecology.

Before sequencers and statistical ecology matured into their modern forms — there were notebooks, binoculars, and patient observers recording what animals ate, one bite at a time.

So how does dietary DNA metabarcoding compare to actually watching animals eat?

Well, it’s different, and sometimes it can be transformative. Both can be essential if your goal is to understand ecology or protect endangered species.
Direct observations of pronghorn antelope grazing in Yellowstone National Park
Direct observations of pronghorn antelope grazing in Yellowstone National Park

Read More
0 Comments

Metabarcoding vs Stable Isotopes

2/27/2026

0 Comments

 

Metabarcoding vs. Stable Isotopes: Two Ways to See What Animals Eat

​Understanding animal diets is fundamental to ecology, evolution, and conservation—but different methods reveal different aspects of feeding behavior. Two widely used approaches, DNA metabarcoding and stable isotope analysis, answer overlapping questions in very different ways.
An endangered Grevy's zebra may eat almost nothing but grass (stable isotopes) yet still eat many grass species (DNA metabarcoding)
An endangered Grevy's zebra may eat almost nothing but grass (stable isotopes) yet still eat many grass species (DNA metabarcoding)

Read More
0 Comments

Why give to an academic conservation program

2/20/2026

0 Comments

 

Why Your Gift to a University’s Conservation Lab Matters More Than You Think

When people think about funding conservation, they often picture supporting land trusts, wildlife rescue centers, or local environmental nonprofits. Those are all essential.

But there’s another engine driving progress in conservation that often flies under the radar: university-based conservation programs.

But aren’t universities already funded? Shouldn't the government pay for research? What difference could my gift make for a big institution like that?
​
I'll explain how university budgets and research funding actually work and you'll see why they often can’t cover the most urgent, innovative conservation work. Instead, you'll find out that your support can unlock exactly the kinds of impact you want to see: real habitats protected, real species spared, and real people trained to carry your conservation values forward.
​TL;DR: gifts to university conservation programs bridge science and action—protecting habitats and species while training the next generation of leaders.

University research programs aren’t “already funded” for impact. Core budgets only cover teaching and operations. Federal grants are vital but slow, highly competitive, and narrowly scoped.

Donor support is uniquely high-leverage because it can:
  • Keep experienced staff and leadership in place between grant cycles.
  • Build and sustain long-term partnerships with agencies, NGOs, and communities.
  • Give students real-world training, travel, and placements with practitioners.
Give today
Our Impact
Open Full Text

Read More
0 Comments

Parasite biology with Cecilia Trani

2/2/2026

0 Comments

 

​Profile: Cecilia Trani Launches a Cross-Continental Parasite Sleuthing Mission to Map the Parasitic Helminths of Atlantic Forest Felids

When parasite biologist Cecilia Trani stands beside a muddy highway in Misiones, the body of every cat she recovers—whether a jaguar, ocelot, or neighborhood pet—becomes a clue to the hidden web of helminths linking the Atlantic Forest with our own backyards. This year she is transforming those clues into a cross-continental campaign that unites Argentina’s Subtropical Biology Institute, Brown University, and a grassroots network of rangers and veterinarians. The whole region is watching 🤩​
Cecilia Trani supervising the capture and handling of a coati for parasite surveillance at HelmCamp in Argentina
Cecilia Trani supervising the capture and handling of a coati for parasite surveillance at HelmCamp in Argentina

Read More
0 Comments

Annual Report 2025

2/1/2026

0 Comments

 

Inside a Year of Conservation at the Kartzinel Lab

Conservation science is changing fast—but the realities of how our work gets done are rarely shared.

To mark the end of 2025, the Kartzinel Lab published its first Annual Report to openly document what it takes to connect modern genomic tools with the front lines of conservation: crossing landscapes, institutions, and communities amid growing uncertainty for scientific research.
2025 Kartzinel Lab Annual Report
👉 Read our 2025 Annual Report
​
Transparency. Impact. Opportunity.​
This report is not a highlight reel. It is a clear account of how research, training, partnerships, and funding come together—or fall apart—at a time when biodiversity loss is accelerating and the decision about how to act can’t wait.

Whether you are considering funding, collaborating, or joining in our work, this report is designed to help you understand how we operate, what we prioritize, and where engagement can make a difference.

Read More
0 Comments

Theory of Change

1/30/2026

0 Comments

 

From Data to Decisions: A Theory of Change for Conservation Science

Jump to: ​The problem | Our role | Theory of change (Inputs→Impact) | Partner with us
Conservation science is often judged by its outputs—papers published, datasets generated, tools released. But conservation outcomes are not produced by academic activity alone. They emerge from a longer causal chain of events that connect research with real-world decisions about how we engage with the natural world.
Jaguar Capture 2025
Kartzinel Lab Postdoc Ezequiel Vanderhoeven, DVM, Ph.D. (left), works with a non-profit to facilitate a jaguar capture / translocation in Argentina. Photo: Proyecto Yaguareté
  • Problem: Conservation decisions are data-limited at the scales that matter.
  • What we do: Pair dietary DNA and population genomics with on-the-ground monitoring (e.g., GPS) at decision-relevant scales. We openly partner and collaborate to amplify our conservation impact.
  • Why it matters: Better dietary + connectivity insights → better corridor planning, resource protection, and management outcomes.

Read More
0 Comments

Alumni Spotlight: Bethan Littleford-Colquhoun

1/27/2026

0 Comments

 

Alumni Spotlight: Bethan Littleford-Colquhoun (Postdoc 2020-2025)

Faculty member in Microbiomics, University of Bath (UK). Former NSF Yellowstone Project lead postdoc + Brown Postdoctoral Excellence Award recipient.
Bethan Littleford-Colquhoun: Position Postdoctoral Research Associate Years 2020-2025 Awards Postdoctoral Excellence Award Prize Fellowship Next steps Faculty member in microbiomics at The University of Bath (UK)
Dr. Bethan Littleford‑Colquhoun was a postdoctoral researcher in the Kartzinel Lab (2020–2025) and a key driver of our NSF-funded Yellowstone wildlife research program in collaboration with the National Park Service. Her work uses dietary DNA metabarcoding and microbiome ecology to understand how wild herbivores respond to seasonal change and migration. She is now a faculty member in Microbiomics at the University of Bath.
  • Faculty website: University of Bath
  • In the news: Researchers propose new model for herbivore diets in Yellowstone National Park
  • Post from the lab: Beth wins 2023 Postdoctoral Excellence Award

Read More
0 Comments

Learning from the past in Yukon

1/12/2026

0 Comments

 

Reconstructing 10,000 Years of Caribou Diets from Melting Yukon Ice Patches

Dr. Carson Hedberg and team on an expedition to the Gladstone Ice Patch
Dr. Carson Hedberg and team on an expedition to the Gladstone Ice Patch
A prestigious NSF Postdoctoral Fellowship from the Office of Polar Programs that was awarded to Carson Hedberg is powering a new Kartzinel Lab project in the Yukon: using ancient DNA preserved in towering alpine ice patches to reconstruct thousands of years of change in caribou diets since the end of the last Ice Age. By sequencing genetic traces of food that have been locked inside caribou dung and literally frozen in time, Carson is asking how these animals have weathered past climate shifts—and what this can tell us about prospects for their future.

Read More
0 Comments

Metabarcoding vs Microhistology

1/6/2026

0 Comments

 

Metabarcoding vs Microhistology: Comparing Dietary Analysis Methods

At First Bite: Why Do Animal Diets Matter? 

Understanding what animals eat is central to ecology, evolution, and conservation. Diets shape species interaction networks, how energy flows through food webs, and what animals can do when environments change. For decades, ecologists have inspected animal scats using microscopes to identify what they have been eating. Today, DNA-based approaches offer a powerful alternative.

So how do these two methods stack up—and when should you use each?
Savanna elephant eating from the understory at Mpala Research Centre in Kenya
Savanna elephant eating from the understory at Mpala Research Centre in Kenya. Photo credit: Tyler Kartzinel

Read More
0 Comments

Do Undergraduate Research in the Kartzinel Lab at Brown

1/3/2026

0 Comments

 

Do undergraduate research in the Kartzinel Lab at Brown

Undergraduates join our lab's research group for many reasons. As members of the research group, students can conduct research in our DNA lab, on the computer, and at field sites throughout Rhode Island and around the world. In addition to 'pure' research in the traditional sense, we also work with students to practice science communication through a variety of media -- we are especially excited to work with students who share our passion for raising awareness about the environment and achieving real-world conservation impacts. Read on and you'll find a trove of information about why and how you should consider joining us!

2025 Voss Fellow Sofia Kassalow shares her exciting research in the lab!

Read More
0 Comments

Earn a Master's Degree in the Kartzinel Lab at Brown

1/2/2026

0 Comments

 

Earn a Master’s degree in the Kartzinel Lab at Brown

Applying for a master's degree can be an extremely rewarding step to take in your career! Brown University is seeking to expand its offerings for graduate degrees at this level, and one of them may be a great match to your personal and professional interests. Because you will discover an array of existing and potentially new opportunities to engage with my lab as a master's student, I want to help you navigate the opportunities and answer common questions you may have. If that sounds good to you, read on...!

Read More
0 Comments

Earn a PhD in the Kartzinel Lab at Brown

1/1/2026

0 Comments

 

Earn a PhD in the Kartzinel Lab at Brown

What you need to know is that PhDs from the Kartzinel Lab lead outstanding basic research that can have transdisciplinary extensions with significant conservation impacts in the real world.

All PhD students will be enrolled in the Department of 
Ecology, Evolution, and Organismal Biology (EEOB), and those who pursue research with a significant conservation component will benefit from unique opportunities within the Institute at Brown for Environment & Society (IBES).

If this sounds like an exciting opportunity for you, I'll share everything you need to know about developing a successful application below...!

Read More
0 Comments

HelmCamp 2026

11/5/2025

0 Comments

 
The call for applications to join HelmCamp 2026 at La Selva Biological Station in Costa Rica 🇨🇷 is now closed. Updates from the field will be posted here and announcements about future offerings will be advertised on the Kartzinel Lab website.

Wildlife Molecular Parasitology: From Taxonomy to DNA in Costa Rica @HelmCamp2026

Students of HelmCamp
Students of HelmCamp learn to analyze DNA from wildlife parasites
Deadline to Apply: March 22, 2026
Field ecologists and conservation biologists increasingly rely on molecular tools to understand the hidden dynamics of wildlife health and biodiversity. Our lab is pioneering the next generation of strategies in Molecular Parasitology.

In 2026, we are pleased to be co-presenting a unique opportunity to gain these skills through the Organization for Tropical Studies (OTS) in Costa Rica. This will be the second installment of our "HelmCamp" field course: Wildlife Molecular Parasitology: Taxonomy to DNA.


Read More
0 Comments

Study Reveals New England is Key to Survival of Diamondback Terrapins

10/3/2025

0 Comments

 

Study: New England is key to survival of diamondback terrapins

A new peer-reviewed study led by researchers at Brown University in partnership with the Rhode Island Department of Environmental Management revealed that diamondback terrapins (Malaclemys terrapin), iconic turtles of America’s salt marshes, face heightened risks at the northern edge of their range in New England.
First large-scale genetic study of diamondback terrapins across their northern range highlights urgent conservation needs as federal endangered species listing is considered.
Diamondback terrapin. Photo: Amanda Lyons
Diamondback terrapin. Photo: Amanda Lyons

Read More
0 Comments

Story behind the science: Yellowstone Wildlife Diets

9/8/2025

0 Comments

 

Story behind the science: Yellowstone wildlife diets

Rethinking how we classify animals based on what they eat—and what it means for wildlife management
An article by science journalist Livi Milloway chronicles an "ah-ha" moment we had in our Yellowstone National Park research project. The story published in The Wildlife Society Bulletin, titled An herbivore by any other name, unpacks how Hannah Hoff's recent paper in PNAS challenges the status quo when it comes to how scientists study and understand wildlife diets. 

Read More
0 Comments

Hoff awarded Blavatnik Family Graduate Fellowship in Biology and Medicine

8/6/2025

0 Comments

 

Hannah Hoff awarded Blavatnik Family Graduate Fellowship

Hannah Hoff, PhD candidate, wins Blavatnik Fellowship

Outstanding scholarship & innovation in the life sciences.
Hannah Hoff, PhD candidate in the lab, has accepted a Blavatnik Family Graduate Fellowship in Biology & Medicine at Brown University. This is a highly competitive and well-deserved honor. Hannah has helped lead our work in Yellowstone National Park since 2021.

Read More
0 Comments

Apportionment of dietary diversity in wildlife

7/15/2025

0 Comments

 

Research highlight: Apportionment of Dietary Diversity in Wildlife published in PNAS (Hannah Hoff et al.)

Led by Hannah Hoff, in collaboration with the National Park Service and the Brown University Herbarium, the lab just published a blockbuster paper that summarizes, critiques, and enhances how ecologists tend to talk about what wildlife eat. There are some surprising and potentially sensitive elements to the story—both for how we monitor and manage wildlife populations and for how we address our implicit biases when observing and reporting on wildlife as scientists.
Related content:
  • Paper published in PNAS
  • Hannah wins prestigious award
  • Code to replicate analyses
  • Results find attention in the press

Read More
0 Comments

Kartzinel Interview with Mongabay about DNA barcoding

6/27/2025

0 Comments

 

Interview: DNA barcoding and conservation (Mongabay)

DNA sequencing to meet global biodiversity goals: Interview with Tyler Kartzinel
Tyler sat down for an interview with Abhishyant Kidangoor of Mongabay to discuss our recent Mini Review in Molecular Ecology, entitled Global Availability of Plant DNA Barcodes as Genomic Resources to Support Basic and Policy-Relevant Biodiversity Research.

You can read our conversation here at Mongabay. It covers topics that are among the most important for ensuring the reliability of DNA-based biodiversity research, including equitable access to the benefits arising from this technology and the reputations of all who use it.

The work was also highlighted in Spanish by El Mostrador: Código de barras de plantas: herramienta genética clave que busca ser fortalecida en el sur global

Read More
0 Comments

What parasites infect tropical wildlife?

6/14/2025

0 Comments

 

Research highlight: what parasites infect tropical wildlife?

One of the top “unsolved problems” in biology is the need to untangle complex networks of species interactions - perhaps nowhere is this more consequential than our need to grapple with the socioecological risks of neglected tropical diseases. Human-livestock-wildlife parasite transmission has been declared a major biomedical challenge for the 21st century with reasons for concern that include the potential for zoonotic helminths—parasitic worms such as nematodes (roundworms), cestodes (tapeworms), and trematodes (flukes) to be transmitted between humans and animals. The effects cause malnutrition, developmental delays, and deaths that disproportionately affect communities undergoing rapid development.

A critical problem is that our strategies to identify and track wildlife parasites originated to combat livestock diseases a century ago. We know very little about how to answer the question: What parasites infect tropical wildlife? We know far more about the subset of parasites that harm humans and livestock than all others. Consequently, our conservation partners struggle to identify the parasites they encounter, hindering our collective efforts to rehabilitate endangered species, evaluate emerging health threats, and treat diseases.

Fortunately, we have just received a Catalyst award from the Institute at Brown for Environment and Society to pursue new strategies in the field of Molecular Parasitology 🏆

Read More
0 Comments

New paper on gastrointestinal parasites of sloths in Costa Rica

5/26/2025

0 Comments

 

Research highlight: gastrointestinal parasites of Costa Rican sloths (Ezequiel Vanderhoeven et al.)

A new paper from the Kartzinel Lab is the first to compare the parasites of wild two- and three-toed sloths living in both primary forests and urban habitats. Led by Ezequiel Vanderhoeven, the paper Host specificity of gastrointestinal parasites in free-ranging sloths from Costa Rica was published in partnership with our friends at Sloth Conservation Foundation.

Read More
0 Comments
<<Previous

    Categories

    All
    Alumni Spotlight
    Awards
    Conservation
    Conservation Genetics
    Conservation Perspectives
    DNA Metabarcoding
    Fieldwork
    Fray Jorge
    Lab & Project Updates
    Metabarcoding Versus
    Microbiome
    Opportunities & Jobs
    Organization For Tropical Studies
    Parasites
    People & Lab Life
    Press & Outreach
    Research Highlights
    Savanna Ecology
    Yellowstone National Park

    RSS Feed


Interested in supporting impactful conservation genomics?
​Partner | Donate | Why Give?
Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University

​Physical Locations:
  • 85 Waterman Street, Providence, Rhode Island 02912 USA
  • Office: 246(B)
  • ​Lab (pre-PCR): 244
  • ​Lab (post-PCR): 230

Mailing Address:
Attn: Tyler Kartzinel
IBES Box 1951
Brown University
Providence, RI, 02912-1951
​
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
Disclaimer: views expressed on this site are those of the author. They should not be interpreted as opinions or policies held by his employer, collaborators, or lab members. Mention of trade names or commercial products does not constitute endorsement.

Copyright 2017-2026 © Tyler Kartzinel
​Privacy Policy
  • Home
  • Research
    • DNA metabarcoding
    • Conservation Genetics
    • Molecular Parasitology
    • Savanna Ecology
    • Sloth Ecology & Evolution
    • Fray Jorge
    • Yellowstone
  • Resources
    • Publications
    • News
    • Bioinformatics Workshop
    • Protocols
    • Software & Data
  • Impact
    • Conservation
    • Annual Reports
    • Donate
  • Work with us
    • People
    • Join
    • Contract & Collaborate >
      • DNA metabarcoding contracts | Kartzinel Lab
      • DNA barcoding
      • Training
  • Contact