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Bioinformatics Workshop

We have curated our most popular Software & Data repositories so you can find them easily

After a gap in maintaining this page, we intend to resume posting periodic updates to highlight a variety of new resources as they become available. Our Lab's GitHub site also provides useful info and resources related to current projects.

Lab protocols posted as resources on our website

7/16/2025

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Beginning in June, we have increasingly made our internal lab methods publicly visible on the "Protocols" section of our webpage. We began with some of the most frequently requested protocols that speak to the unique strengths of our lab's work and experience, featuring field-to-lab protocols for collecting and banking dietary samples, parasite samples, and plant barcode samples. We have expanded to include...
several protocols for plant barcoding and metabarcoding, which are among the most widely used in our lab as well as those that we collaborate with. 

More protocols will be posted soon, including several of our sequencing protocols on various platforms (Sanger, Nanopore, Illumina).

Protocols are being posted in both English and Spanish, especially in cases where protocols are being used in primarily Spanish-speaking countries. 

Please comment or contact the PI if there is a protocol you would especially like to see, or if you have any suggestions for improvements or alternatives. A number of our protocols used to be publicly available via our lab wiki, but unfortunately the site that hosted us is no longer active and so we are transitioning. 
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Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University
​Address: 85 Waterman Street, Providence, Rhode Island 02912 USA
Office: 246(B)
​Lab (pre-PCR): 244
​Lab (post-PCR): 230
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
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  • Home
  • Resources
    • Protocols
    • Software & Data
  • Work with us
    • Contract & Collaborate >
      • DNA metabarcoding
    • Join
  • Research
    • Publications
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • People
  • Conservation
  • Contact