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Bioinformatics Workshop

We have curated our most popular Software & Data repositories so you can find them easily

Our Lab's GitHub site also provides useful info and resources related to current projects

Using AI in Research

1/3/2026

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Guidance on the use of AI in the Kartzinel Lab

Tyler Kartzinel

Last updated January 2026.

Jump to: Rules | Risks | Reasons for Concern | University Links & Policies
Artificial intelligence is increasingly useful as a tool to improve our research and learning. We use it to troubleshoot code, polish writing, get good ideas about how to visualize data, create document templates that save time on busywork… But at the same time, we must be cognizant of legitimate concerns about the accuracy of information it can provide, its ability to reuse confidential information that we disclosed in chats, and the risk of short-circuiting our own creative uses of the scientific method.

This post summarizes rules that lab members should follow when using AI in their work. I do not want to regurgitate the types of dry, legalese we are provided by our employer--rather I will attempt to illustrate the fine-line we have to walk to ensure we are using the tool appropriately while minimizing the risk of unintended harm. I will summarize reasons for concern using language familiar to biologists and conservationists broadly. Some of the details are specific to researchers at Brown, but I believe the information is readily transferable and I welcome others to use this document as a template for their own policies.

​Please read on... 

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Preparing dietary DNA data files for publication

10/9/2025

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Preparing Dietary DNA Data for Manuscript Files

Working with dietary DNA metabarcoding data? Unsure how to concisely summarize your workflow for publication? Tired of all the effort required to format your data tables for archiving in Dryad, supplementary materials, or other archives? The lab has posted new code to our GitHub repository that will help you solve all of these problems.

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Our standard DNA metabarcoding pipeline updated and posted for 2025

7/17/2025

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Our Standard DNA Metabarcoding Pipeline

Fans of the lab will be very excited to see this much-anticipated release of our standard dietary DNA metabarcoding pipeline, with a walk-through easily accessible on the centralized "Software & Data" section of our webpage. Until now, people would have to access code repositories associated with each of our publications or contact us directly to model their analysis after our well-established workflow. That led to multiple versions of the pipeline in circulation, since we are constantly improving it and published versions quickly ended up out of date. We have tried to solve that problem by...
Diet metabarcoding pipeline overview based on tutorial and workflow from the Kartzinel Lab and CCV at Brown University

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Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University
​Address: 85 Waterman Street, Providence, Rhode Island 02912 USA
Office: 246(B)
​Lab (pre-PCR): 244
​Lab (post-PCR): 230
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
Disclaimer: views expressed on this site are those of the author. They should not be interpreted as opinions or policies held by his employer, collaborators, or lab members. Mention of trade names or commercial products does not constitute endorsement.

Copyright 2017-2026 © Tyler Kartzinel
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  • Home
  • Research
    • DNA metabarcoding
    • Conservation Genetics
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • Resources
    • Publications
    • Software & Data
    • Protocols
    • News
    • Bioinformatics Workshop
  • Impact
    • Conservation
    • Annual Reports
    • Donate
  • Work with us
    • People
    • Join
    • Contract & Collaborate >
      • DNA metabarcoding contracts
      • DNA barcoding
      • Training
  • Contact