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Bioinformatics Workshop

We have curated our most popular Software & Data repositories so you can find them easily

Our Lab's GitHub site also provides useful info and resources related to current projects

Hot off the press: Code from Hoff et al. 2025 PNAS paper

7/17/2025

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Hot Off the Press: Code from Hoff et al. 2025 PNAS Paper

New feature on our Software & Data repository page: Hot off the press! Featuring code from Hannah Hoff's 2025 PNAS paper, The Apportionment of Dietary Diversity in Wildlife.

This paper presented a potentially paradigm-shifting strategy to quantify and characterize the number of unique 'diet types' that exist within a population or community. The strategy is based on a simple machine-learning algorithm and described in the Hoff et al. 2025 PNAS paper, which used the community of migratory large mammalian herbivores -- such as bison and elk -- as a prime example.

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New Featured Software: geographic coverage of DNA barcodes

7/15/2025

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New Featured Software: Geographic Coverage of DNA Barcodes

Featured Software from the Kartzinel Lab: Geographic Coverage of DNA Barcodes. The inaugural code repository to be highlighted in our Featured Software section of the Software & Data page presents the Quarto Code Book published in association with our Molecular Ecology Review Paper, "Global Availability of Plant DNA Barcodes as Genomic Resources to Support Basic and Policy-Relevant Biodiversity Research" can be easily modified to evaluate the geographic coverage of other data sets. Although the featured code emphasizes geographic coverage from our work in Yellowstone National Park...

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Rolling out a curated set of software and data repositories

7/11/2025

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Rolling Out a Curated Set of Software and Data Repositories

Over the past couple of years, a lot of things have changed. Some changes have improved how we share the software and data that we generate in the lab, necessitated in part by the growing popularity of our work. We recognized a substantial benefit to enhancing our commitment to providing easy access and open-source principles and therefore made it easier to find and access our most in-demand repositories across a variety of platforms that include GitHub, Zenodo, NCBI, BOLD, etc. You can now easily find links with descriptions from our main Software & Data landing page. Check it out!
Software & Data

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High-performance computing on Oscar

1/24/2019

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High-Performance Computing on the OSCAR Supercomputer

Brown University's high performance computing cluster, called Oscar, is a keystone resource for research in the Kartzinel Lab. The resource and information about it are regularly updated; users may find the links provided in this post to be especially helpful as they are getting  started.

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Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University
​Address: 85 Waterman Street, Providence, Rhode Island 02912 USA
Office: 246(B)
​Lab (pre-PCR): 244
​Lab (post-PCR): 230
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
Disclaimer: views expressed on this site are those of the author. They should not be interpreted as opinions or policies held by his employer, collaborators, or lab members. Mention of trade names or commercial products does not constitute endorsement.

Copyright 2017-2026 © Tyler Kartzinel
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  • Home
  • Research
    • DNA metabarcoding
    • Conservation Genetics
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • Resources
    • Publications
    • Software & Data
    • Protocols
    • News
    • Bioinformatics Workshop
  • Impact
    • Conservation
    • Annual Reports
    • Donate
  • Work with us
    • People
    • Join
    • Contract & Collaborate >
      • DNA metabarcoding contracts
      • DNA barcoding
      • Training
  • Contact