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Bioinformatics Workshop

We have curated our most popular Software & Data repositories so you can find them easily

Our Lab's GitHub site also provides useful info and resources related to current projects

New Featured Software: geographic coverage of DNA barcodes

7/15/2025

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New Featured Software: Geographic Coverage of DNA Barcodes

Featured Software from the Kartzinel Lab: Geographic Coverage of DNA Barcodes. The inaugural code repository to be highlighted in our Featured Software section of the Software & Data page presents the Quarto Code Book published in association with our Molecular Ecology Review Paper, "Global Availability of Plant DNA Barcodes as Genomic Resources to Support Basic and Policy-Relevant Biodiversity Research" can be easily modified to evaluate the geographic coverage of other data sets. Although the featured code emphasizes geographic coverage from our work in Yellowstone National Park...

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Rolling out a curated set of software and data repositories

7/11/2025

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Rolling Out a Curated Set of Software and Data Repositories

Over the past couple of years, a lot of things have changed. Some changes have improved how we share the software and data that we generate in the lab, necessitated in part by the growing popularity of our work. We recognized a substantial benefit to enhancing our commitment to providing easy access and open-source principles and therefore made it easier to find and access our most in-demand repositories across a variety of platforms that include GitHub, Zenodo, NCBI, BOLD, etc. You can now easily find links with descriptions from our main Software & Data landing page. Check it out!
Software & Data

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Building a plant DNA barcode library; fieldwork edition

1/16/2021

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Building a Plant DNA Barcode Library: Fieldwork Edition

This post provides resources and advice from the Kartzinel Lab to help you plan and build a plant DNA reference library to use in dietary metabarcoding projects, which evidence has shown can markedly improve results. We recently did the math and found that our team has produced some of the most extensive and widely used DNA barcode libraries in the world, with experience from Kenyan savannas, Yellowstone National Park, arid scrublands of Chile, and many other places around the world.

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New release of trnL-P6 reference data for Mpala Research Centre

2/27/2019

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Plant DNA Barcode Library for Mpala Research Centre

For more than 13 years, we have built and maintained a plant DNA Barcode library for the flora of Mpala Research Centre in Kenya. Many versions have been released, the most substantial of which was associated withe 2019 publication of the Plant DNA-barcode library and community phylogeny for a semi-arid East African savanna in Molecular Ecology. This post is intended to help you track significant developments in this long-term collaborative effort and find the most current version to use in your analyses.

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Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University
​Address: 85 Waterman Street, Providence, Rhode Island 02912 USA
Office: 246(B)
​Lab (pre-PCR): 244
​Lab (post-PCR): 230
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
Disclaimer: views expressed on this site are those of the author. They should not be interpreted as opinions or policies held by his employer, collaborators, or lab members. Mention of trade names or commercial products does not constitute endorsement.

Copyright 2017-2026 © Tyler Kartzinel
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  • Home
  • Research
    • DNA metabarcoding
    • Conservation Genetics
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • Resources
    • Publications
    • Software & Data
    • Protocols
    • News
    • Bioinformatics Workshop
  • Impact
    • Conservation
    • Annual Reports
    • Donate
  • Work with us
    • People
    • Join
    • Contract & Collaborate >
      • DNA metabarcoding contracts
      • DNA barcoding
      • Training
  • Contact