CONSERVATION & MOLECULAR ECOLOGY
  • Home
  • Resources
    • Protocols
    • Software & Data
  • Work with us
    • Contract & Collaborate >
      • DNA metabarcoding
    • Join
  • Research
    • Publications
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • People
  • Conservation
  • Contact

Bioinformatics Workshop

We have curated our most popular Software & Data repositories so you can find them easily

After a gap in maintaining this page, we intend to resume posting periodic updates to highlight a variety of new resources as they become available. Our Lab's GitHub site also provides useful info and resources related to current projects.

Our standard DNA metabarcoding pipeline updated and posted for 2025

7/17/2025

0 Comments

 
Fans of the lab will be very excited to see this much-anticipated release of our standard dietary DNA metabarcoding pipeline, with a walk-through easily accessible on the centralized "Software & Data" section of our webpage. Until now, people would have to access code repositories associated with each of our publications or contact us directly to model their analysis after our well-established workflow. That led to multiple versions of the pipeline in circulation, since we are constantly improving it and published versions quickly ended up out of date. We have tried to solve that problem by...

Read More
0 Comments

High-performance computing on Oscar

1/24/2019

0 Comments

 
Prof Rebecca Kartzinel shared a tutorial on Brown University's high-performance computing cluster, called Oscar.
  • Notes and code are available.
0 Comments

    Categories

    All
    Dada2
    Data
    Data Management
    DNA Barcodes
    Ggplot2
    Hannah Hoff
    High Performance Computing
    High-performance Computing
    Hot Off The Press
    Lab Protocols
    Maps
    Metabarcoding
    Oscar
    Phylogenetics
    Pipelines
    Quarto Code Book
    Reference Libraries
    R Tutorials
    Software
    Vignettes

    RSS Feed


Dr. Tyler Kartzinel
Department of Ecology, Evolution, and Organismal Biology
Institute at Brown for Environment and Society
Brown University
​Address: 85 Waterman Street, Providence, Rhode Island 02912 USA
Office: 246(B)
​Lab (pre-PCR): 244
​Lab (post-PCR): 230
​Phone: 1-401-863-5851
tyler_kartzinel[at]brown.edu
Disclaimer: views expressed on this site are those of the author. They should not be interpreted as opinions or policies held by his employer, collaborators, or lab members. Mention of trade names or commercial products does not constitute endorsement.

Copyright 2025 © Tyler Kartzinel
​Privacy Policy
  • Home
  • Resources
    • Protocols
    • Software & Data
  • Work with us
    • Contract & Collaborate >
      • DNA metabarcoding
    • Join
  • Research
    • Publications
    • Yellowstone
    • Fray Jorge
    • Savanna Ecology
    • Molecular Parasitology
  • People
  • Conservation
  • Contact